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Stack-Trace in error message is
Plugin: ODDB::SwissindexPharmaPlugin Error: ArgumentError Message: wrong number of arguments (2 for 1) Backtrace: /var/www/oddb.org/src/plugin/plugin.rb:40:in `initialize' /var/www/oddb.org/src/util/updater.rb:508:in `new' /var/www/oddb.org/src/util/updater.rb:508:in `block in update_notify_simple' /var/www/oddb.org/src/util/updater.rb:488:in `call' /var/www/oddb.org/src/util/updater.rb:488:in `wrap_update' /var/www/oddb.org/src/util/updater.rb:506:in `update_notify_simple' /var/www/oddb.org/src/util/updater.rb:423:in `update_package_trade_status_by_swissindex' /var/www/oddb.org/src/util/updater.rb:260:in `update_bsv_followers' /var/www/oddb.org/src/util/updater.rb:202:in `run' /var/www/oddb.org/jobs/import_daily:13:in `block in <module:Util>' /var/www/oddb.org/src/util/job.rb:40:in `call' /var/www/oddb.org/src/util/job.rb:40:in `run' /var/www/oddb.org/jobs/import_daily:12:in `<module:Util>' /var/www/oddb.org/jobs/import_daily:11:in `<module:ODDB>' /var/www/oddb.org/jobs/import_daily:10:in `<main>'
In src/util/updater.rb update_package_trade_status_by_swissindex calls update_notify_simple(SwissindexPharmaPlugin, 'Swissindex Pharma', :update_package_trade_status, [logging]). Which in turn will pass @options to plug = klass.new(@app, @options). @options is set in update_company_textinfos2 since a commit by Yasu of February 19 2013. The solution I will try is to set it @options = nil at the beginning of update_package_trade_status_by_swissindex. To avoid similar errors, I reset @options in update_company_textinfos2
I did not see this error on my VM (6GB RAM) because update_textinfo_swissmedicinfo(pi) failed with not enough memory available.
Added some GC.start and debugs for memory usage to see whether I can make the import_daily pass on my VM.
An example can be found in "Levex" (61816) where we find "Die vom EUCAST (European Committee on Antimicrobial Susceptibility Testing, siehe http://www.eucast.org/) empfohlenen minimalen Hemmstoff-Konzentrationen".
Imported Levex and in the yaml file I see that there we have link tag in it. Adapted src/view/chapter.rb to create HREF in theses cases. Reimporting the Levex and I still cannot see view on the generated html (via http://oddb-ci.dyndns.org/de/gcc/fachinfo/swissmedicnr/61816).
After re-thinking again, added just a format :link to the ODDB::Text::Paragraph and removed ODDB::Text::HttpLink. Now the tests are okay and after importing Levex and Rimifon the URL display.
17417 Rimifon does not yet correctly display http://www.who.int/docstore/gtb/publications/ttgnp/PDF/2003.313.pdf. But I don't like to patch this error, as the writer did use one style for for http://www.who.int and a different one for docstore/gtb/publications/ttgnp.
Pushed commit Create links in FI/PI from swissmedicinfo
There is a problem in the paragraph handling that sometimes a leading space is inserted or removed. This should be fixed sometime, but will probably break quite a few test cases.