2013 | Niklaus.20131217-fix-sequences-00 >>

20131218-integrate-epha-interaction-6

Summary

• Todo-list for starting in 2014
• integrate a simple interface to display the interaction from EPHA

Commits

• https://github.com/ngiger/htmlgrid/commit/e64fa35c5c11166cf3c1ef67c16437d26a20e03a Added more unit-test for working with list
• https://github.com/ngiger/oddb.org/commit/2aaca90f55a284d93ee4b3c15ba30be9e3e3b552 Reworked epha_interactions layout
• https://github.com/ngiger/oddb.org/commit/0a4da3bf1896ea8cc627673274e3354386059604 Finetuning layout
• https://github.com/ngiger/oddb.org/commit/b7fc6f9541471004c8b03d11c3ea748df7718325 Removed superfluous component. Corrected color
• https://github.com/ngiger/oddb.org/commit/60068692e4a65b36039267e05f4878dbcd67dfb2 Clean up by removing old search files
• (on separate branch) https://github.com/ngiger/oddb.org/commit/01c62283aff9093cfeb295b316babe9364537307 Remove not needed files for old search form

Index

• integrate a simple interface to display the interaction from EPHA
• Todo-list for starting in 2014

---

Todo-list for starting in 2014

• Replace the @session.persistent_user_input(:drugs) by using the url, e.g. ?ean=ean_01,ean_02,ean_03
• Fix problem that after removing an product you cannot add it again
• Fix problem that one can end up with twice the screen (see E-Mail of Zeno of today)
• Fix problem that there are sequences '00' for products that have other sequences, too.
• Fix problem missing SL Flag at Xeljanz with correct sequence 01.

integrate a simple interface to display the interaction from EPHA

Continue work. Example is still interaction is between Marcoumar and Aspirin. Open problems are:

• interaction_chooser should work items having more than one ATC-code
• import of epha_interactions should collect references, too.
• should allow direct access to results via URL
• unit-test
• Ratings (german only) fix coded in src/view/interactions/interaction_chooser.rb.
• Same for html color codes
• Text is still "Medikamente wählen und dann die Interaktion in 3D anzeigen"

Example at matrix.epha.org is:

• Losartan Mepha
• Metoprolol-Teva Reta
• Nolvadex
• Paroxetin-Mepha

Example from Zeno

• Marcoumar
• Aspirin cardio
• Inderal
• Ponstan
• Viagra

Decided to make unit-tests for the working example teraction_chooser and then trying to add different entites or override compose_list/header.

Okay. Now I can reproduce my error inside a test-case. See Attach:test_interaction_list.txt

Error: test_interaction_list_to_html(TestComposite)
  NoMethodError: undefined method `set_attributes' for nil:NilClass
/opt/src/htmlgrid/lib/htmlgrid/composite.rb:260:in `to_html'
test/test_interaction_list.rb:232:in `test_interaction_list_to_html'
     229:           '<TABLE cellspacing="0">'+
     230:           '<TR><TD class="small">fachinfo</TD><TD class="interaction-atc">atc</TD><TD class="small">delete</TD></TR></TABLE>'+
     231:           '</TD></TR><TR><TD>Asp</TD></TR></TABLE>'
  => 232:     assert_equal(expected, composite.to_html(CGI.new))
     233:     puts "\n" + composite.to_html(CGI.new)
     234:   end
     235: end

Added new tests to htmlgrid as constructing a list like needed in interactions is not trivial. See commit Added more unit-test for working with list

Refactoring displays correct info now on $stdout, but nothing is displayed. There must be a missing element. Fixed this problem by appending @value << InteractionChooserDrugList.new. Next problem ist that Alle löschen appears twice in the layout. Fixed this problem. Now deleting a medicament works now too. Have seen that sometime when the list is empty, you cannot add the old medicament. Adding another worked.

Must filter the interactions, as they are show too many times. Now the whole stuff looks quite good. I still prefer that we should only display the interactions that stem from adding a new drug, as I think this corresponds better to the doctors thinking which will try to add drugs in decreasing order of importance and will probably replace the last one added by one which has less interactions. See

I still have a few too many lines at the bottome. Clean up. Also used the background color for the header. Pushed commits.

• Reworked epha_interactions layout
• Finetuning layout
• [[https://github.com/ngiger/oddb.org/commit/b7fc6f9541471004c8b03d11c3ea748df7718325|Removed superfluous component. Corrected color

But I think the interactions should have some space on top and the left to clearly distinguis them. See

Removed switch to instant search via commit Clean up by removing old search files

Then I tried to remove on a separate branch all references to the old search via the commit Remove not needed files for old search form. Then I tested search by trademark "Xeljanz" and could not find anything. There I did not merge this branch into master.