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20100924-check-sl_entry

<< Masa.20100927-search-link-between_sl_entry_and_limitation_text | 2010 | Masa.20100923-trace-limitation-data-flow-in-oddbapp >>

Brain Storming last night
Confirm bsv_xml.rb again
Trace SlEntry when 'L' returns
Hypothesis testing
Check ODDB::Persistence::Pointer#update_values
Forcibly making connection between sl_entry and limitation_text

Goal

Trace limitation data flow in oddbapp.rb / 80%

Milestones

~~Confirm the update problem yesterday~~ 12:00
~~Check ODDB::App#create method regarding LimitationText~~ suspend
~~Check ODDB::Persistence::Point#diff method~~ 15:30
~~Check ODDB::Persistence::Pointer#update_values~~ 16:30

Summary

http://masay.ch/2010/09/24/check-sl_entry/

Commits
ToDo Tomorrow
Keep in Mind

emerge --sync

Dimdi-Import-Error.

20100922-trace-limitation-data-flow-in-bsvXml?action=edit
- 20100922 Options for LimitationNiveau
20100907 Ticket 242, Comment 9 - notification Mail
20100908 rpdf2txt GPLv3
database name of ch.oddb.org => oddb.org
block sample http://q.hatena.ne.jp/1217573703 (japanese)
check ydpm priorities

Attached Files

Brain Storming last night

'grep -r create_limitation_text' tells me that there is no method to call create_limitation_text method
There seems to be no method to create a LimitationText instance of SlEntry class from ODDB::App#update method
ODDB::App#create method looks to create a new instance via calling ODDB::Persistence::Pointer#issue_create method
My hypothesis is there is a creating method other than bsv_xml.rb

grep search

masa@masa ~/ywesee/oddb.org $ grep -r create_limitation_text src
src/model/analysis/position.rb:                 def create_limitation_text
src/model/index_therapeuticus.rb:    def create_limitation_text
src/model/migel/group.rb:                       def create_limitation_text
src/model/migel/product.rb:                     def create_limitation_text
src/model/migel/subgroup.rb:                    def create_limitation_text
src/model/slentry.rb:           def create_limitation_text

masa@masa ~/ywesee/oddb.org $ grep -r @app.create src
src/plugin/analysis.rb:                 @app.create(ptr)
src/plugin/bsv_xml.rb:            group = @app.create @pointer
src/plugin/bsv_xml.rb:          comp = @app.create cptr
src/plugin/interaction.rb:                                      cyp450 = @app.create(pointer)
src/plugin/swissmedic.rb:        comp ||= @app.create(seq.pointer + :composition)
src/plugin/swissmedic.rb:        part ||= @app.create(package.pointer + :part)
src/plugin/vaccines.rb:          atc = @app.create(Persistence::Pointer.new([:atc_class, code]))
src/util/updater.rb:                    logs = @app.create(logs_pointer)
src/util/updater.rb:              @app.create(logs_pointer + [:log, latest >> 1])
src/util/updater.rb:                    logs = @app.create(logs_pointer)
src/util/updater.rb:      logs = @app.create(logs_pointer)
src/util/updater.rb:                    logs = @app.create(logs_pointer)

masa@masa ~/ywesee/oddb.org $ grep -r "def issue_create" src
src/util/persistence.rb:                        def issue_create(app)

masa@masa ~/ywesee/oddb.org $ grep -r "issue_create" src
src/util/oddbapp.rb:                    if(item = pointer.issue_create(self))
src/util/persistence.rb:                        def issue_create(app)
src/util/persistence.rb:                                # Only the hook must be stored in issue_create

Confirm bsv_xml.rb again

Procedure

confirm the default result (55972 with 'L' and 56107 without 'L')
- http://oddb.masa.org/en/gcc/search/zone/drugs/search_query/Isotretinoin/
delete entries in Preparation.xml except for 55972 and 56107
run update_bsv
(not reboot oddbd)
run the search http://oddb.masa.org/en/gcc/search/zone/drugs/search_query/Isotretinoin/
- 'NoMethodError undefined method `limitation_text' for nil:NilClass' on the screen
- the following on the log of oddbd

ODDB::View::Drugs::RootResultList::COMPONENTS[[1, 0]] in create(limitation_text)
ODDB::View::Drugs::ResultComposite::COMPONENTS[[0, 2]] in create(ODDB::View::Drugs::RootResultList)
ODDB::View::Drugs::Result::COMPONENTS[[0, 2]] in create(content)

reboot oddbd
- confirm the result http://oddb.masa.org/en/gcc/search/zone/drugs/search_query/Isotretinoin/
- every drug other than 55972 and 56107 becomes not 'A / SL / SG' in Category
delete two Preparation entries, 55972009 and 55972013, from Preparation.xml
run update_bsv
- 'NoMethodError undefined method `limitation_text' for nil:NilClass' on the screen
reboot oddbd
confirm 'L' disappers for 55972009 and 55972013, and the category bocomes 'A', not 'A / SL / SG'.
add two Preparation entries, 55972009 and 55972013, again
run update_bsv
confirm the result and nothing changes
reboot oddbd
@@confirm the result, 'L' still not appears but category returns back 'A / SL / SG'
delete only the limitation entry for 55972013 and 55972015
run update_bsv
the result nothing changes
reboot oddbd
confirm the result and 'L' disappers but category does not change

Summary

If I delete Preparation entry from Preparation.xml, 'L' never returns back
If I delete only Limitation entry, 'L' can return back

Trace SlEntry when 'L' returns

Default condition

before

after

Experiment
Check ODBA Cache data in the process from 'before' to 'after' src/plugin/bsv_xml.rb

print "pointer="
p pointer
print "========== ODBA Cache ==========\n"
sl = pointer.creator.resolve @app
pp sl
                @app.update pointer.creator, sl_data, :bag

Result

pointer=#<ODDB::Persistence::Pointer:0x7f3c81fb6bd8 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "019"], [:sl_entry]]>
========== ODBA Cache ==========
#<ODDB::SlEntry:0x7f3c81fafc48
 @bsv_dossier="17846",
 @data_origins=
  {"status"=>:bag,
   "introduction_date"=>:bag,
   "valid_from"=>:bag,
   "limitation_points"=>:bag,
   "limitation"=>:bag,
   "valid_until"=>:bag,
   "bsv_dossier"=>:bag},
 @introduction_date=Sun, 01 Jul 2007,
 @limitation=nil,
 @limitation_points=nil,
 @limitation_text=nil,
 @odba_id=1271980,
 @odba_observers=[],
 @odba_persistent=true,
 @oid=1271980,
 @pointer=
  #<ODDB::Persistence::Pointer:0x7f3c81faf0b8
   @directions=
    [[:registration, "55972"],
     [:sequence, "03"],
     [:package, "019"],
     [:sl_entry]]>,
 @revision=Fri Sep 24 10:10:46 +0200 2010,
 @status="0",
 @valid_from=Sun, 01 Jul 2007,
 @valid_until=Fri, 31 Dec 9999>

pointer=#<ODDB::Persistence::Pointer:0x7f3c81f81690 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "017"], [:sl_entry]]>
========== ODBA Cache ==========
#<ODDB::SlEntry:0x7f3c81f7b128
 @bsv_dossier="17846",
 @data_origins=
  {"status"=>:bag,
   "introduction_date"=>:bag,
   "valid_from"=>:bag,
   "limitation_points"=>:bag,
   "limitation"=>:bag,
   "valid_until"=>:bag,
   "bsv_dossier"=>:bag},
 @introduction_date=Sun, 01 Jul 2007,
 @limitation=nil,
 @limitation_points=nil,
 @limitation_text=nil,
 @odba_id=1271979,
 @odba_observers=[],
 @odba_persistent=true,
 @oid=1271979,
 @pointer=
  #<ODDB::Persistence::Pointer:0x7f3c81f7a5c0
   @directions=
    [[:registration, "55972"],
     [:sequence, "03"],
     [:package, "017"],
     [:sl_entry]]>,
 @revision=Fri Sep 24 10:10:46 +0200 2010,
 @status="0",
 @valid_from=Sun, 01 Jul 2007,
 @valid_until=Fri, 31 Dec 9999>

Difference

limitation_text = nil !?

Confirm
src/plugin/bsv_xml.rb

print "\npointer="
p pointer
print "========== sl_data ==========\n"
pp sl_data
                @app.update pointer.creator, sl_data, :bag

Result

pointer=#<ODDB::Persistence::Pointer:0x7f23b91fc168 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "017"], [:sl_entry]]>
========== sl_data ==========
{:bsv_dossier=>"17846",
 :limitation_points=>nil,
 :status=>"0",
 :introduction_date=>Sun, 01 Jul 2007,
 :limitation=>true,
 :valid_until=>Fri, 31 Dec 9999,
 :valid_from=>Sun, 01 Jul 2007}

pointer=#<ODDB::Persistence::Pointer:0x7f23b9085b18 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "004"], [:sl_entry]]>
========== sl_data ==========
{:bsv_dossier=>"17885",
 :limitation_points=>nil,
 :status=>"0",
 :introduction_date=>Thu, 01 May 2003,
 :limitation=>true,
 :valid_until=>Fri, 31 Dec 9999,
 :valid_from=>Thu, 01 May 2003}

Notes

There looks no difference

Confirm
src/util/persistence.rb

      def issue_update(hook, values, origin = nil)
        obj = resolve(hook)
        unless(obj.nil?)
          diff = obj.diff(values, hook)
print "obj.class=", obj.class, "\n"
print "diff="
pp diff
          unless diff.empty?
            obj.update_values(diff, origin)
            obj.odba_store
          end
        end
        obj
      end

Result

obj.class=ODDB::Sequence
diff={}
obj.class=ODDB::Package
diff={}
obj.class=ODDB::Sequence
diff={}
obj.class=ODDB::Package
diff={}

pointer=#<ODDB::Persistence::Pointer:0x7f451084d788 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "019"], [:sl_entry]]>
obj.class=ODDB::SlEntry
diff={:limitation_points=>nil, :limitation=>true}


pointer=#<ODDB::Persistence::Pointer:0x7f4510832140 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "017"], [:sl_entry]]>
obj.class=ODDB::SlEntry
diff={:limitation_points=>nil, :limitation=>true}
obj.class=ODDB::LimitationText
diff={:de=>
  #<ODDB::Text::Chapter:0x7f451086e258
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7f451086e140
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7f451086de70
         @format=
          #<ODDB::Text::Format:0x7f451086dce0 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7f451086dce0 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Schwere, therapieresistente Akneformen.">],
      @subheading="Isotretinoin Mepha\n">]>,
 :fr=>
  #<ODDB::Text::Chapter:0x7f451086c570
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7f451086c458
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7f451086c318
         @format=
          #<ODDB::Text::Format:0x7f451086c1d8 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7f451086c1d8 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text=
          "Formes graves de l'acn\303\251, r\303\251sistantes \303\240 la th\303\251rapie.">],
      @subheading="Isotretinoine Mepha\n">]>,
 :it=>
  #<ODDB::Text::Chapter:0x7f451086abf8
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7f451086ab08
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7f451086a9f0
         @format=
          #<ODDB::Text::Format:0x7f451086a888 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7f451086a888 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Forme gravi di acne, resistenti alla terapia.">],
      @subheading="Isotretinoine Mepha\n">]>}
obj.class=ODDB::LimitationText
diff={:de=>
  #<ODDB::Text::Chapter:0x7f451086e2f8
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7f451086d8d0
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7f451086d7b8
         @format=
          #<ODDB::Text::Format:0x7f451086d678 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7f451086d678 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Schwere, therapieresistente Akneformen.">],
      @subheading="Isotretinoin Mepha\n">]>,
 :fr=>
  #<ODDB::Text::Chapter:0x7f451086c5e8
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7f451086be90
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7f451086bd78
         @format=
          #<ODDB::Text::Format:0x7f451086bc38 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7f451086bc38 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text=
          "Formes graves de l'acn\303\251, r\303\251sistantes \303\240 la th\303\251rapie.">],
      @subheading="Isotretinoine Mepha\n">]>,
 :it=>
  #<ODDB::Text::Chapter:0x7f451086ac70
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7f451086a568
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7f451086a450
         @format=
          #<ODDB::Text::Format:0x7f451086a2e8 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7f451086a2e8 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Forme gravi di acne, resistenti alla terapia.">],
      @subheading="Isotretinoine Mepha\n">]>}
obj.class=ODDB::Registration
diff={}





obj.class=ODDB::Sequence
diff={}
obj.class=ODDB::Package
diff={}
obj.class=ODDB::Sequence
diff={}
obj.class=ODDB::Package
diff={}

pointer=#<ODDB::Persistence::Pointer:0x7f4510678ed0 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "004"], [:sl_entry]]>
obj.class=ODDB::SlEntry
diff={:limitation_points=>nil}

pointer=#<ODDB::Persistence::Pointer:0x7f4510662c48 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "002"], [:sl_entry]]>
obj.class=ODDB::SlEntry
diff={:limitation_points=>nil}
obj.class=ODDB::LimitationText
diff={}
obj.class=ODDB::LimitationText
diff={}
obj.class=ODDB::Registration
diff={}

Notes

ODDB::Persistence::Pointer#diff create SlEntry differences
55972: :limitation=false => :limitation=true, :limitation_text=nil => :limitation_text=<object>
56107: :limitation=ture
55972: detects the difference of limitation_text
56107: does not detect the difference of limitation_text

Check
src/plugin/bsv_xml.rb

print "txt_ptr="
p txt_ptr
print "========== lim_data ==========\n"
pp lim_data
                @app.update txt_ptr.creator, lim_data, :bag

Result

pointer=#<ODDB::Persistence::Pointer:0x7fd90412fb80 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "019"], [:sl_entry]]>

pointer=#<ODDB::Persistence::Pointer:0x7fd904118160 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "017"], [:sl_entry]]>
txt_ptr=#<ODDB::Persistence::Pointer:0x7fd9041017d0 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "019"], [:sl_entry], [:limitation_text]]>
========== lim_data ==========
{:de=>
  #<ODDB::Text::Chapter:0x7fd9041501a0
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd904150060
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd90414fef8
         @format=
          #<ODDB::Text::Format:0x7fd90414fc78 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd90414fc78 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Schwere, therapieresistente Akneformen.">],
      @subheading="Isotretinoin Mepha\n">]>,
 :fr=>
  #<ODDB::Text::Chapter:0x7fd90414e620
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd90414e530
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd90414e418
         @format=
          #<ODDB::Text::Format:0x7fd90414e2d8 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd90414e2d8 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text=
          "Formes graves de l'acn\303\251, r\303\251sistantes \303\240 la th\303\251rapie.">],
      @subheading="Isotretinoine Mepha\n">]>,
 :it=>
  #<ODDB::Text::Chapter:0x7fd90414cca8
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd90414cbb8
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd90414ca78
         @format=
          #<ODDB::Text::Format:0x7fd90414c8c0 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd90414c8c0 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Forme gravi di acne, resistenti alla terapia.">],
      @subheading="Isotretinoine Mepha\n">]>}
txt_ptr=#<ODDB::Persistence::Pointer:0x7fd9040ab308 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "017"], [:sl_entry], [:limitation_text]]>
========== lim_data ==========
{:de=>
  #<ODDB::Text::Chapter:0x7fd904150218
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd90414f958
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd90414f818
         @format=
          #<ODDB::Text::Format:0x7fd90414f6b0 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd90414f6b0 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Schwere, therapieresistente Akneformen.">],
 :fr=>
  #<ODDB::Text::Chapter:0x7fd90414e6c0
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd90414dfb8
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd90414dea0
         @format=
          #<ODDB::Text::Format:0x7fd90414dd60 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd90414dd60 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text=
          "Formes graves de l'acn\303\251, r\303\251sistantes \303\240 la th\303\251rapie.">],
      @subheading="Isotretinoine Mepha\n">]>,
 :it=>
  #<ODDB::Text::Chapter:0x7fd90414cd48
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd90414c438
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd90414c280
         @format=
          #<ODDB::Text::Format:0x7fd90414c0c8 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd90414c0c8 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Forme gravi di acne, resistenti alla terapia.">],
      @subheading="Isotretinoine Mepha\n">]>}
pointer=#<ODDB::Persistence::Pointer:0x7fd903f4dfb0 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "004"], [:sl_entry]]>

pointer=#<ODDB::Persistence::Pointer:0x7fd903f39f88 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "002"], [:sl_entry]]>
txt_ptr=#<ODDB::Persistence::Pointer:0x7fd903f250b0 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "004"], [:sl_entry], [:limitation_text]]>
========== lim_data ==========
{:de=>
  #<ODDB::Text::Chapter:0x7fd903f6cd20
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd903f6cb90
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd903f6ca00
         @format=
          #<ODDB::Text::Format:0x7fd903f6c7f8 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd903f6c7f8 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Schwere, therapieresistente Akneformen.">],
      @subheading="Isotretinoin Teva\n">]>,
 :fr=>
  #<ODDB::Text::Chapter:0x7fd903f6aca0
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd903f6abb0
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd903f6aa48
         @format=
          #<ODDB::Text::Format:0x7fd903f6a8b8 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd903f6a8b8 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text=
          "Formes graves de l'acn\303\251, r\303\251sistantes \303\240 la th\303\251rapie.">],
      @subheading="Isotretinoin Teva\n">]>,
 :it=>
  #<ODDB::Text::Chapter:0x7fd903f68d38
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd903f68c48
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd903f68b30
         @format=
          #<ODDB::Text::Format:0x7fd903f689a0 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd903f689a0 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Forme gravi di acne, resistenti alla terapia.">],
      @subheading="Isotretinoin Teva\n">]>}
txt_ptr=#<ODDB::Persistence::Pointer:0x7fd903ef79f8 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "002"], [:sl_entry], [:limitation_text]]>
========== lim_data ==========
{:de=>
  #<ODDB::Text::Chapter:0x7fd903f6cde8
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd903f6c438
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd903f6c2f8
         @format=
          #<ODDB::Text::Format:0x7fd903f6c1b8 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd903f6c1b8 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Schwere, therapieresistente Akneformen.">],
      @subheading="Isotretinoin Teva\n">]>,
 :fr=>
  #<ODDB::Text::Chapter:0x7fd903f6ad40
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd903f6a3b8
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd903f6a250
         @format=
          #<ODDB::Text::Format:0x7fd903f6a048 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd903f6a048 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text=
          "Formes graves de l'acn\303\251, r\303\251sistantes \303\240 la th\303\251rapie.">],
      @subheading="Isotretinoin Teva\n">]>,
 :it=>
  #<ODDB::Text::Chapter:0x7fd903f68db0
   @heading="",
   @sections=
    [#<ODDB::Text::Section:0x7fd903f68680
      @paragraphs=
       [#<ODDB::Text::Paragraph:0x7fd903f68518
         @format=
          #<ODDB::Text::Format:0x7fd903f683d8 @end=-1, @start=0, @values=[]>,
         @formats=
          [#<ODDB::Text::Format:0x7fd903f683d8 @end=-1, @start=0, @values=[]>],
         @preformatted=false,
         @raw_txt=nil,
         @text="Forme gravi di acne, resistenti alla terapia.">],
      @subheading="Isotretinoin Teva\n">]>}

Notes

There is no difference of lim_data in both 55972 and 56107
Namely, lim_data and sl_data are the same but ODDB::App#diff detects the limitation_text diference only in the case of 55972
I guess the reason for that is ODDB::Persistence::Pointer#diff does not delete the old limitation_text data from ODBA cache
Next, I should check the difference between new and old limitation_text data in ODDB::Persistence::Pointer#diff

Hypothesis testing

src/util/persistence.rb

    def diff(values, app=nil, masa=nil)
      #adjust_types(values, app)
      result = {}
      adjust_types(values, app).each { |key, value|
        if(self.respond_to?(key))
          oldval = self.send(key)
if masa == ODDB::LimitationText
  print "key="
  pp key
  print "=========== oldval ==========\n"
  pp oldval
end
          if(oldval.nil? || undiffable?(oldval) || value != oldval)
            result.store(key, value)
          end
        end
      }
      result
    end

Result

pointer=#<ODDB::Persistence::Pointer:0x7fe03cc6fa10 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "019"], [:sl_entry]]>
obj.class=ODDB::SlEntry

pointer=#<ODDB::Persistence::Pointer:0x7fe03cc59cb0 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "017"], [:sl_entry]]>
obj.class=ODDB::SlEntry
obj.class=ODDB::LimitationText
key=:de
=========== oldval ==========
""
key=:fr
=========== oldval ==========
""
key=:it
=========== oldval ==========
""
obj.class=ODDB::LimitationText
key=:de
=========== oldval ==========
""
key=:fr
=========== oldval ==========
""
key=:it
=========== oldval ==========
""

pointer=#<ODDB::Persistence::Pointer:0x7fe03cad8e68 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "004"], [:sl_entry]]>
obj.class=ODDB::SlEntry

pointer=#<ODDB::Persistence::Pointer:0x7fe03cac41e8 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "002"], [:sl_entry]]>
obj.class=ODDB::SlEntry
obj.class=ODDB::LimitationText
key=:de
=========== oldval ==========
#<ODDB::Text::Chapter:0x7fe03caa9578
 @heading="",
 @sections=
  [#<ODDB::Text::Section:0x7fe03caa94b0
    @paragraphs=
     [#<ODDB::Text::Paragraph:0x7fe03caa9410
       @format=
        #<ODDB::Text::Format:0x7fe03caa92a8 @end=-1, @start=0, @values=[]>,
       @formats=
        [#<ODDB::Text::Format:0x7fe03caa92a8 @end=-1, @start=0, @values=[]>],
       @preformatted=false,
       @raw_txt=nil,
       @text="Schwere, therapieresistente Akneformen.">],
    @subheading="Isotretinoin Teva\n">]>
key=:fr
=========== oldval ==========
#<ODDB::Text::Chapter:0x7fe03caa9168
 @heading="",
 @sections=
  [#<ODDB::Text::Section:0x7fe03caa90c8
    @paragraphs=
     [#<ODDB::Text::Paragraph:0x7fe03caa9028
       @format=
        #<ODDB::Text::Format:0x7fe03caa8f60 @end=-1, @start=0, @values=[]>,
       @formats=
        [#<ODDB::Text::Format:0x7fe03caa8f60 @end=-1, @start=0, @values=[]>],
       @preformatted=false,
       @raw_txt=nil,
       @text=
        "Formes graves de l'acn\303\251, r\303\251sistantes \303\240 la th\303\251rapie.">],
    @subheading="Isotretinoin Teva\n">]>
key=:it
=========== oldval ==========
#<ODDB::Text::Chapter:0x7fe03caa9c80
 @heading="",
 @sections=
  [#<ODDB::Text::Section:0x7fe03caa9b40
    @paragraphs=
     [#<ODDB::Text::Paragraph:0x7fe03caa9a28
       @format=
        #<ODDB::Text::Format:0x7fe03caa98e8 @end=-1, @start=0, @values=[]>,
       @formats=
        [#<ODDB::Text::Format:0x7fe03caa98e8 @end=-1, @start=0, @values=[]>],
       @preformatted=false,
       @raw_txt=nil,
       @text="Forme gravi di acne, resistenti alla terapia.">],
    @subheading="Isotretinoin Teva\n">]>
obj.class=ODDB::LimitationText
key=:de
=========== oldval ==========
#<ODDB::Text::Chapter:0x7fe03ca7c4b0
 @heading="",
 @sections=
  [#<ODDB::Text::Section:0x7fe03ca7c410
    @paragraphs=
     [#<ODDB::Text::Paragraph:0x7fe03ca7c398
       @format=
        #<ODDB::Text::Format:0x7fe03ca7c320 @end=-1, @start=0, @values=[]>,
       @formats=
        [#<ODDB::Text::Format:0x7fe03ca7c320 @end=-1, @start=0, @values=[]>],
       @preformatted=false,
       @raw_txt=nil,
       @text="Schwere, therapieresistente Akneformen.">],
    @subheading="Isotretinoin Teva\n">]>
key=:fr
=========== oldval ==========
#<ODDB::Text::Chapter:0x7fe03ca7c208
 @heading="",
 @sections=
  [#<ODDB::Text::Section:0x7fe03ca7c168
    @paragraphs=
     [#<ODDB::Text::Paragraph:0x7fe03ca7c0f0
       @format=
        #<ODDB::Text::Format:0x7fe03ca7c078 @end=-1, @start=0, @values=[]>,
       @formats=
        [#<ODDB::Text::Format:0x7fe03ca7c078 @end=-1, @start=0, @values=[]>],
       @preformatted=false,
       @raw_txt=nil,
       @text=
        "Formes graves de l'acn\303\251, r\303\251sistantes \303\240 la th\303\251rapie.">],
    @subheading="Isotretinoin Teva\n">]>
key=:it
=========== oldval ==========
#<ODDB::Text::Chapter:0x7fe03ca7c9b0
 @heading="",
 @sections=
  [#<ODDB::Text::Section:0x7fe03ca7c898
    @paragraphs=
     [#<ODDB::Text::Paragraph:0x7fe03ca7c7d0
       @format=
        #<ODDB::Text::Format:0x7fe03ca7c708 @end=-1, @start=0, @values=[]>,
       @formats=
        [#<ODDB::Text::Format:0x7fe03ca7c708 @end=-1, @start=0, @values=[]>],
       @preformatted=false,
       @raw_txt=nil,
       @text="Forme gravi di acne, resistenti alla terapia.">],
    @subheading="Isotretinoin Teva\n">]>

Notes

The old values remain as I expected

Experiment
src/util/persistence.rb

    def diff(values, app=nil, masa=nil)
      #adjust_types(values, app)
      result = {}
      adjust_types(values, app).each { |key, value|
        if(self.respond_to?(key))
          oldval = self.send(key)

if masa == ODDB::LimitationText
  oldval = nil
end
          if(oldval.nil? || undiffable?(oldval) || value != oldval)
            result.store(key, value)
          end
        end
      }
      result
    end

Result

ODDB::Persistece::Point#diff works well
But failed

Therefore

Even if diff works, showing 'L' does not work
The bug must be different place

Consideration

The problem may be the connection between sl_entry and limitation_text
Once this connection is removed, it would never come back only by running update_bsv
If a Preparation entry is removed from Preparation.xml, this link seems to disappear
If a Limitation entry is removed from Preparation.xml, this link seems to remain
There is data of both slentry and limitation text in ODBA cache
Parsing and updating process of Preparation.xml look going well

Solution

The next target is: how to create the link between @sl_entry and qlimitation_text

Check ODDB::Persistence::Pointer#update_values

Experiment
src/util/persistence.rb

    def update_values(values, origin=nil)
      @revision = Time.now
      values.each { |key, value|
print "key=", key, "\n"
        key = key.to_s
        data_origins.store(key, origin)
        self.send(key + '=', value)
      }
    end

Result

pointer=#<ODDB::Persistence::Pointer:0x7f89de2b1f00 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "019"], [:sl_entry]]>
key=limitation_points
key=limitation

pointer=#<ODDB::Persistence::Pointer:0x7f89de29ad00 @directions=[[:registration, "55972"], [:sequence, "03"], [:package, "017"], [:sl_entry]]>
key=limitation_points
key=limitation

pointer=#<ODDB::Persistence::Pointer:0x7f89de138c00 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "004"], [:sl_entry]]>
key=limitation_points
key=limitation

pointer=#<ODDB::Persistence::Pointer:0x7f89de123ad0 @directions=[[:registration, "56107"], [:sequence, "01"], [:package, "002"], [:sl_entry]]>
key=limitation_points
key=limitation
key=report
key=parts
key=mail_from
key=report
key=recipients

Conclusion

update_bsv (src/util/bsv_xml.rb) does not update the @limitation_text of sl_entry object (the link between sl_entry and limitation_text)

Forcibly making connection between sl_entry and limitation_text

Experiment
src/plugin/bsv_xml.rb

                if (lim_data = @lim_texts[pac_ptr]) && !lim_data.empty?
                  sl_data.store :limitation, true
# experiment
txt_ptr = pack.sl_entry.pointer + :limitation_text
sl_data.store :limitation_text, txt_ptr.resolve(@app)
                end

Result

ywesee Developer-Wiki
Dieses Wiki richtet sich an alle ywesee-Entwickler

About

EBPS

Bbmb

ODBA

Oddb

Rpdf2txt

YDPM

YDIM

XmlConv

20100924-check-sl_entry

Brain Storming last night

Confirm bsv_xml.rb again

Trace SlEntry when 'L' returns

Hypothesis testing

Check ODDB::Persistence::Pointer#update_values

Forcibly making connection between sl_entry and limitation_text

ywesee Developer-Wiki Dieses Wiki richtet sich an alle ywesee-Entwickler

About

EBPS

Bbmb

ODBA

Oddb

Rpdf2txt

YDPM

YDIM

XmlConv

20100924-check-sl_entry

Brain Storming last night

Confirm bsv_xml.rb again

Trace SlEntry when 'L' returns

Hypothesis testing

Check ODDB::Persistence::Pointer#update_values

Forcibly making connection between sl_entry and limitation_text

ywesee Developer-Wiki
Dieses Wiki richtet sich an alle ywesee-Entwickler