20111006-ruby193-oddb
<< | Index | >>
- Goal/Estimate/Evaluation
- Set up oddb.org on Ruby 1.9.3 / 80% / 70%
- Milestones
- Setup gems for oddb.org on Ruby 1.9.3
- Resolve rockit problem (calc pointer, calc size)
- Summary
Setup oddb.org on Ruby 1.9.3
gem list
masa@masa ~/ywesee/oddb.org $ ruby193 /usr/bin/gem list *** LOCAL GEMS *** bigdecimal (1.1.0) dbd-pg (0.3.9) dbi (0.4.5) deprecated (2.0.1) gd2 (1.1.1) htmlgrid (1.0.0) io-console (0.3) json (1.5.4) minitest (2.5.1) odba (1.0.0) pg (0.11.0) rake (0.9.2.2) rclconf (1.0.0) rdoc (3.9.4) rockit (0.7.2) sbsm (1.0.0) turing (0.0.11) ydim (1.0.0)
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': /home/masa/rubylib/rockit/token.rb:138: invalid multibyte char (US-ASCII) (SyntaxError)
/home/masa/rubylib/rockit/token.rb:138: syntax error, unexpected '~', expecting ')'
super("EOF", "�~~��~^^~" + rand(1e10).inspect)
^
/home/masa/rubylib/rockit/token.rb:138: invalid multibyte char (US-ASCII)
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/rubylib/rockit/grammar.rb:1:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/rubylib/rockit/lalr_parsetable_generator.rb:1:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/rubylib/rockit/rockit.rb:2:in `<top (required)>'
...
Note
- This is an encoding problem about the old rockit library
- The rockit version is 0.3.8
- The latest rockit gem version is 0.7.2
- Remove the path to the old rockit library
masa@masa ~/ywesee/oddb.org $ unset RUBYLIB
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': cannot load such file -- rockit/rockit (LoadError)
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/util/persistence.rb:5:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/model/user.rb:7:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/view/personal.rb:5:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/view/logohead.rb:8:in `<top (required)>'
...
- check rockit in oddb.org
masa@masa ~/ywesee/oddb.org $ grep -r rockit src/ src/model/part.rb:require 'rockit/rockit' src/plugin/vaccines.rb:require 'rockit/rockit' src/util/persistence.rb:require 'rockit/rockit'
- rockit/token.rb
# encoding: ascii-8bit
- rockit/rockit_grammars_parser.rb
# encoding: ascii-8bit
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
/home/masa/rubylib/rockit/grammar.rb:82:in `make_element': cannot make an element from nil (ArgumentError)
from /home/masa/rubylib/rockit/grammar.rb:92:in `block in make_elements'
from /home/masa/rubylib/rockit/grammar.rb:92:in `map'
from /home/masa/rubylib/rockit/grammar.rb:92:in `make_elements'
from /home/masa/rubylib/rockit/grammar.rb:361:in `initialize'
from /home/masa/rubylib/rockit/grammar.rb:484:in `new'
from /home/masa/rubylib/rockit/grammar.rb:484:in `prod'
from /home/masa/rubylib/rockit/rockit_grammar_ast_eval.rb:134:in `block in eval_ast'
from /home/masa/rubylib/rockit/syntax_tree.rb:337:in `map'
from /home/masa/rubylib/rockit/syntax_tree.rb:337:in `rescue in method_missing'
from /home/masa/rubylib/rockit/syntax_tree.rb:333:in `method_missing'
from /home/masa/rubylib/rockit/rockit_grammar_ast_eval.rb:132:in `eval_ast'
from /home/masa/rubylib/rockit/rockit_grammar_ast_eval.rb:129:in `block in eval_ast'
from /home/masa/rubylib/rockit/syntax_tree.rb:337:in `map'
from /home/masa/rubylib/rockit/syntax_tree.rb:337:in `rescue in method_missing'
from /home/masa/rubylib/rockit/syntax_tree.rb:333:in `method_missing'
from /home/masa/rubylib/rockit/rockit_grammar_ast_eval.rb:129:in `eval_ast'
from /home/masa/rubylib/rockit/rockit_grammar_ast_eval.rb:115:in `rockit_productions_eval'
from /home/masa/rubylib/rockit/rockit_grammar_ast_eval.rb:180:in `rockit_grammar_eval'
from /home/masa/rubylib/rockit/rockit.rb:26:in `generate_parser'
...
- Reference
- rpdf2txt rockit problem http://dev.ywesee.com/wiki.php/Masa/20110118-update-rpdf2txt
- Rockit Original site http://rockit.sourceforge.net/
- Presentation 2006 http://www.slideshare.net/jmorrison/rockit-a-parser-generator-for-ruby
- Solution
Trace error message- Understand Rockit and replace it to the latest version
- The latest github https://github.com/robertfeldt/rockit (version 0.8.6)
Understand Rockit
git clone
masa@masa ~/work $ git clone https://github.com/robertfeldt/rockit.git
Note
- rockit is used to create 'Pointer' to point an object in the ODBA cache (src/util/persistence.rb)
- rockit is also used to calculate 'size' of model (src/model/part.rb)
Comment out (temporary) 'rockit' process
- src/util/persistence.rb
class Pointer
=begin
@parser = Parse.generate_parser <<-EOG
Grammar OddbSize
Tokens
STEP = /!/u
ARG = /,/u
PTR = /:/u
PEND = /\\./u
EXPR = /([^!,:.%]|%[!,:.%])+/u
Productions
Pointer -> PTR Step* PEND?
[: _, steps, _]
Step -> STEP EXPR Arg*
[: _, command, arguments]
Arg -> ARG (EXPR | Pointer)
[: _, argument]
EOG
=end
class << self
def parse(string)
=begin
p "getin parse"
p string
ast = @parser.parse(string)
ast.compact!
produce_pointer(ast)
=end
'pointer'
end
- src/model/part.rb
module ODDB
module SizeParser
=begin
@@parser = Parse.generate_parser <<-EOG
Grammar OddbSize
Tokens
DESCRIPTION = /(?!#{unit_pattern}\s)#{iso_pattern}(\s+#{iso_pattern})*/u
NUMERIC = /#{numeric_pattern}/u
SPACE = /\s+/u [:Skip]
UNIT = /#{unit_pattern}/u
Productions
Size -> Multiple* Addition? Count? Measure? Scale? Dose? DESCRIPTION?
Count -> 'je'? NUMERIC
Multiple -> NUMERIC UNIT? /[xXà]|Set/u
Measure -> NUMERIC UNIT UNIT?
Addition -> NUMERIC UNIT? '+'
Scale -> '/' NUMERIC? UNIT
Dose -> '(' NUMERIC UNIT ')'
EOG
=end
def parse_size(size)
multi, addition, count, measure, scale, dose, comform = nil
=begin
begin
ast = @@parser.parse(size)
multi, addition, count, measure, scale, dose, comform = ast.flatten
count = (count ? count[1].value.to_i : 1)
rescue ParseException, AmbigousParseException => e
=end
count = size.to_i
# end
...
Setup oddb.org on Ruby 1.9.3 (again)
- install yus (1.0.0)
- install mechanize (2.0.1)
masa@masa ~/ywesee/oddb.org $ ruby193 /usr/bin/gem install mechanize Fetching: nokogiri-1.5.0.gem (100%) Building native extensions. This could take a while... Fetching: net-http-persistent-1.9.gem (100%) Fetching: net-http-digest_auth-1.1.1.gem (100%) Fetching: webrobots-0.0.12.gem (100%) Fetching: mechanize-2.0.1.gem (100%) Successfully installed nokogiri-1.5.0 Successfully installed net-http-persistent-1.9 Successfully installed net-http-digest_auth-1.1.1 Successfully installed webrobots-0.0.12 Successfully installed mechanize-2.0.1 5 gems installed Installing ri documentation for nokogiri-1.5.0... Installing ri documentation for net-http-persistent-1.9... Installing ri documentation for net-http-digest_auth-1.1.1... Installing ri documentation for webrobots-0.0.12... Installing ri documentation for mechanize-2.0.1... Installing RDoc documentation for nokogiri-1.5.0... Installing RDoc documentation for net-http-persistent-1.9... Installing RDoc documentation for net-http-digest_auth-1.1.1... Installing RDoc documentation for webrobots-0.0.12... Installing RDoc documentation for mechanize-2.0.1...
Note
- The other gems are also installed
- nokogiri-1.5.0
- net-http-persistent-1.9
- net-http-digest_auth-1.1.1
- webrobots-0.0.12
- install hpricot (0.8.4)
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': /home/masa/ywesee/oddb.org/src/model/text.rb:138: invalid multibyte char (US-ASCII) (SyntaxError)
/home/masa/ywesee/oddb.org/src/model/text.rb:138: invalid multibyte char (US-ASCII)
/home/masa/ywesee/oddb.org/src/model/text.rb:138: syntax error, unexpected $end, expecting ')'
&& /[‐-]\s*$/u.match(@raw_txt) &...
^
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/model/analysis/permission.rb:6:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/model/analysis/position.rb:8:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/ext/analysisparse/src/analysis_hpricot.rb:5:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/plugin/analysis.rb:7:in `<top (required)>'
...
- src/model/text.rb
# encoding: utf-8
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': cannot load such file -- encoding/character/utf-8 (LoadError)
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/model/text.rb:8:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/model/analysis/permission.rb:6:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
...
- install character-encodings (0.4.1)
masa@masa ~/ywesee/oddb.org $ ruby193 /usr/bin/gem install character-encodings
Fetching: character-encodings-0.4.1.gem (100%)
Building native extensions. This could take a while...
ERROR: Error installing character-encodings:
ERROR: Failed to build gem native extension.
/home/masa/bin/ruby193rc1/bin/ruby extconf.rb
extconf.rb:4: invalid multibyte char (US-ASCII)
extconf.rb:4: invalid multibyte char (US-ASCII)
extconf.rb:4: syntax error, unexpected $end, expecting keyword_end
checking_for "‘#{opt}’ option to compiler" do
^
Gem files will remain installed in /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/character-encodings-0.4.1 for inspection.
Results logged to /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/character-encodings-0.4.1/ext/encoding/character/utf-8/gem_make.out
- comment out charactor-encodings (src/model/text.rb)
#require 'encoding/character/utf-8'
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
racc/parser.rb:33: warning: already initialized constant Racc_Runtime_Version
racc/parser.rb:34: warning: already initialized constant Racc_Runtime_Revision
racc/parser.rb:36: warning: already initialized constant Racc_Runtime_Core_Version_R
racc/parser.rb:37: warning: already initialized constant Racc_Runtime_Core_Revision_R
racc/parser.rb:41: warning: already initialized constant Racc_Runtime_Core_Revision_C
racc/parser.rb:49: warning: already initialized constant Racc_Main_Parsing_Routine
racc/parser.rb:50: warning: already initialized constant Racc_YY_Parse_Method
racc/parser.rb:51: warning: already initialized constant Racc_Runtime_Core_Version
racc/parser.rb:52: warning: already initialized constant Racc_Runtime_Core_Revision
racc/parser.rb:53: warning: already initialized constant Racc_Runtime_Type
/home/masa/ywesee/oddb.org/src/util/quanty/parse.rb:471:in `module_eval': parse.y:84: invalid multibyte char (US-ASCII) (SyntaxError)
parse.y:84: invalid multibyte char (US-ASCII)
parse.y:84: syntax error, unexpected $end, expecting keyword_then or ',' or ';' or '\n'
when /\A[A-Za-z_µ]+([A-Za-z_µ0-9-]+[A-Za-z_µ])?/ou
^
from /home/masa/ywesee/oddb.org/src/util/quanty/parse.rb:471:in `<class:Parse>'
from /home/masa/ywesee/oddb.org/src/util/quanty/parse.rb:469:in `<class:Quanty>'
from /home/masa/ywesee/oddb.org/src/util/quanty/parse.rb:466:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/util/quanty.rb:1:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/model/dose.rb:4:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/plugin/bsv_xml.rb:10:in `<top (required)>'
...
- src/util/quanty/parse.rb
# encoding: utf-8
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
racc/parser.rb:33: warning: already initialized constant Racc_Runtime_Version
racc/parser.rb:34: warning: already initialized constant Racc_Runtime_Revision
racc/parser.rb:36: warning: already initialized constant Racc_Runtime_Core_Version_R
racc/parser.rb:37: warning: already initialized constant Racc_Runtime_Core_Revision_R
racc/parser.rb:41: warning: already initialized constant Racc_Runtime_Core_Revision_C
racc/parser.rb:49: warning: already initialized constant Racc_Main_Parsing_Routine
racc/parser.rb:50: warning: already initialized constant Racc_YY_Parse_Method
racc/parser.rb:51: warning: already initialized constant Racc_Runtime_Core_Version
racc/parser.rb:52: warning: already initialized constant Racc_Runtime_Core_Revision
racc/parser.rb:53: warning: already initialized constant Racc_Runtime_Type
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': /home/masa/ywesee/oddb.org/src/util/quanty/fact.rb:65: invalid multibyte char (US-ASCII) (SyntaxError)
/home/masa/ywesee/oddb.org/src/util/quanty/fact.rb:65: invalid multibyte char (US-ASCII)
/home/masa/ywesee/oddb.org/src/util/quanty/fact.rb:65: syntax error, unexpected $end, expecting keyword_then or ';' or '\n'
if /^([µA-Za-z_]+([A-Za-z_0-9-]+[A-Za...
^
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/util/quanty.rb:2:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/model/dose.rb:4:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/plugin/bsv_xml.rb:10:in `<top (required)>'
...
- src/util/quanty/fact.rb
# encoding: utf-8
- install rubyzip (0.9.4)
- install savon (0.9.7)
masa@masa ~/ywesee/oddb.org $ ruby193 /usr/bin/gem install savon Fetching: builder-3.0.0.gem (100%) Fetching: nori-1.0.2.gem (100%) Fetching: rack-1.3.4.gem (100%) Fetching: httpi-0.9.5.gem (100%) Fetching: wasabi-2.0.0.gem (100%) Fetching: gyoku-0.4.4.gem (100%) Fetching: akami-1.0.0.gem (100%) Fetching: savon-0.9.7.gem (100%) Successfully installed builder-3.0.0 Successfully installed nori-1.0.2 Successfully installed rack-1.3.4 Successfully installed httpi-0.9.5 Successfully installed wasabi-2.0.0 Successfully installed gyoku-0.4.4 Successfully installed akami-1.0.0 Successfully installed savon-0.9.7 8 gems installed Installing ri documentation for builder-3.0.0... unable to convert "\xF1" from ASCII-8BIT to UTF-8 for README, skipping unable to convert "\xF1" from ASCII-8BIT to UTF-8 for README.rdoc, skipping Installing ri documentation for nori-1.0.2... Installing ri documentation for rack-1.3.4... Installing ri documentation for httpi-0.9.5... Installing ri documentation for wasabi-2.0.0... Installing ri documentation for gyoku-0.4.4... Installing ri documentation for akami-1.0.0... Installing ri documentation for savon-0.9.7... Installing RDoc documentation for builder-3.0.0... unable to convert "\xF1" from ASCII-8BIT to UTF-8 for README, skipping unable to convert "\xF1" from ASCII-8BIT to UTF-8 for README.rdoc, skipping Installing RDoc documentation for nori-1.0.2... Installing RDoc documentation for rack-1.3.4... Installing RDoc documentation for httpi-0.9.5... Installing RDoc documentation for wasabi-2.0.0... Installing RDoc documentation for gyoku-0.4.4... Installing RDoc documentation for akami-1.0.0... Installing RDoc documentation for savon-0.9.7...
Note
- The other installed libraries
- builder-3.0.0
- nori-1.0.2
- rack-1.3.4
- httpi-0.9.5
- wasabi-2.0.0
- gyoku-0.4.4
- akami-1.0.0
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
racc/parser.rb:33: warning: already initialized constant Racc_Runtime_Version
racc/parser.rb:34: warning: already initialized constant Racc_Runtime_Revision
racc/parser.rb:36: warning: already initialized constant Racc_Runtime_Core_Version_R
racc/parser.rb:37: warning: already initialized constant Racc_Runtime_Core_Revision_R
racc/parser.rb:41: warning: already initialized constant Racc_Runtime_Core_Revision_C
racc/parser.rb:49: warning: already initialized constant Racc_Main_Parsing_Routine
racc/parser.rb:50: warning: already initialized constant Racc_YY_Parse_Method
racc/parser.rb:51: warning: already initialized constant Racc_Runtime_Core_Version
racc/parser.rb:52: warning: already initialized constant Racc_Runtime_Core_Revision
racc/parser.rb:53: warning: already initialized constant Racc_Runtime_Type
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': /home/masa/ywesee/oddb.org/src/util/html_parser.rb:152: invalid multibyte char (US-ASCII) (SyntaxError)
/home/masa/ywesee/oddb.org/src/util/html_parser.rb:152: invalid multibyte char (US-ASCII)
/home/masa/ywesee/oddb.org/src/util/html_parser.rb:152: syntax error, unexpected $end, expecting ')'
super(data.gsub("\302\222", "’"))
^
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/ext/meddata/src/session.rb:8:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/ext/meddata/src/drbsession.rb:4:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/ext/meddata/src/meddata.rb:7:in `<top (required)>'
...
- src/util/html_parser.rb
# encoding: utf-8
- install rmail (1.0.0)
- src/model/part.rb
# encoding: utf-8
- src/plugin/medwin.rb
# encoding: utf-8
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
racc/parser.rb:33: warning: already initialized constant Racc_Runtime_Version
racc/parser.rb:34: warning: already initialized constant Racc_Runtime_Revision
racc/parser.rb:36: warning: already initialized constant Racc_Runtime_Core_Version_R
racc/parser.rb:37: warning: already initialized constant Racc_Runtime_Core_Revision_R
racc/parser.rb:41: warning: already initialized constant Racc_Runtime_Core_Revision_C
racc/parser.rb:49: warning: already initialized constant Racc_Main_Parsing_Routine
racc/parser.rb:50: warning: already initialized constant Racc_YY_Parse_Method
racc/parser.rb:51: warning: already initialized constant Racc_Runtime_Core_Version
racc/parser.rb:52: warning: already initialized constant Racc_Runtime_Core_Revision
racc/parser.rb:53: warning: already initialized constant Racc_Runtime_Type
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/rpdf2txt-0.8.2/lib/rpdf2txt-rockit/token.rb:138: invalid multibyte char (US-ASCII) (SyntaxError)
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/rpdf2txt-0.8.2/lib/rpdf2txt-rockit/token.rb:138: syntax error, unexpected '~', expecting ')'
super("EOF", "�~~��~^^~" + rand(1e10).inspect)
^
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/rpdf2txt-0.8.2/lib/rpdf2txt-rockit/token.rb:138: invalid multibyte char (US-ASCII)
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/rpdf2txt-0.8.2/lib/rpdf2txt-rockit/grammar.rb:1:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
...
Note
- Again rockit error (it is from rpdf2txt-rockit.rb)
- The rockit library is used in 3 parts of oddb.org
- create Pointer
- calculate size
- in rpdf2txt library
- rpdf2txt library is required in src/plugin/narcotic.rb
- ruby193rc1/lib/ruby/gems/1.9.1/gems/rpdf2txt-0.8.2/lib/rpdf2txt-rockit/token.rb
# encoding: ascii-8bit
- ruby193rc1/lib/ruby/gems/1.9.1/gems/rpdf2txt-0.8.2/lib/rpdf2txt-rockit/rockit_grammars_parser.rb
# encoding: ascii-8bit
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/deprecated-2.0.1/lib/deprecated.rb:199: warning: already initialized constant Deprecate
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/gd2-1.1.1/lib/gd2.rb:30: Use RbConfig instead of obsolete and deprecated Config.
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': iconv will be deprecated in the future, use String#encode instead.
could not find htmlgrid.so, falling back to pure-ruby class
racc/parser.rb:33: warning: already initialized constant Racc_Runtime_Version
racc/parser.rb:34: warning: already initialized constant Racc_Runtime_Revision
racc/parser.rb:36: warning: already initialized constant Racc_Runtime_Core_Version_R
racc/parser.rb:37: warning: already initialized constant Racc_Runtime_Core_Revision_R
racc/parser.rb:41: warning: already initialized constant Racc_Runtime_Core_Revision_C
racc/parser.rb:49: warning: already initialized constant Racc_Main_Parsing_Routine
racc/parser.rb:50: warning: already initialized constant Racc_YY_Parse_Method
racc/parser.rb:51: warning: already initialized constant Racc_Runtime_Core_Version
racc/parser.rb:52: warning: already initialized constant Racc_Runtime_Core_Revision
racc/parser.rb:53: warning: already initialized constant Racc_Runtime_Type
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': cannot load such file -- md5 (LoadError)
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/rpdf2txt-0.8.2/lib/rpdf2txt/object.rb:30:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
...
Note
- The git latest code of rpdf2txt is different from the gem 0.8.2
- We should update the rpdf2txt gem
- ruby193rc1/lib/ruby/gems/1.9.1/gems/rpdf2txt-0.8.2/lib/rpdf2txt/object.rb
require 'digest/md5'
- ruby193rc1/lib/ruby/gems/1.9.1/gems/rpdf2txt-0.8.2/lib/rpdf2txt/parser.rb
# encoding: utf-8 require 'digest/md5'
- src/plugin/ouwerkerk.rb
- encoding: utf-8
- install spreadsheet (0.6.5.9)
masa@masa ~/ywesee/oddb.org $ ruby193 /usr/bin/gem install spreadsheet Fetching: ruby-ole-1.2.11.2.gem (100%) Fetching: spreadsheet-0.6.5.9.gem (100%) Successfully installed ruby-ole-1.2.11.2 Successfully installed spreadsheet-0.6.5.9 2 gems installed Installing ri documentation for ruby-ole-1.2.11.2... Installing ri documentation for spreadsheet-0.6.5.9... Installing RDoc documentation for ruby-ole-1.2.11.2... Installing RDoc documentation for spreadsheet-0.6.5.9...
Note
- The other installed library
- ruby-ole-1.2.11.2
- src/view/dataformat.rb
# encoding: utf-8
- src/plugin/swissmedic.rb
# encoding: utf-8
- install swissmedic-diff (0.1.3)
masa@masa ~/work $ git clone ssh://ywesee@scm.ywesee.com/home/ywesee/git/swissmedic-diff masa@masa ~/work $ cd swissmedic-diff/ masa@masa ~/work/swissmedic-diff $ gem build swissmedic-diff.gemspec masa@masa ~/work/swissmedic-diff $ unset RUBYOPT masa@masa ~/work/swissmedic-diff $ ruby193 /usr/bin/gem install swissmedic-diff-0.1.3.gem Fetching: parseexcel-0.5.2.gem (100%) WARNING: parseexcel-0.5.2 has an invalid nil value for @cert_chain Successfully installed parseexcel-0.5.2 Successfully installed swissmedic-diff-0.1.3 2 gems installed Installing ri documentation for parseexcel-0.5.2... unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/format.rb, skipping unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/olestorage.rb, skipping unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/parser.rb, skipping unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/workbook.rb, skipping unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/worksheet.rb, skipping Installing ri documentation for swissmedic-diff-0.1.3... Installing RDoc documentation for parseexcel-0.5.2... unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/format.rb, skipping unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/olestorage.rb, skipping unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/parser.rb, skipping unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/workbook.rb, skipping unable to convert "\xFC" from ASCII-8BIT to UTF-8 for lib/parseexcel/worksheet.rb, skipping Installing RDoc documentation for swissmedic-diff-0.1.3...
- src/view/rss/fachinfo.rb
# encoding: utf-8
- src/view/drugs/fachinfo.rb
# encoding: utf-8
class RootFachinfoComposite < View::Drugs::FachinfoComposite
CHOOSER_CLASS = EditFiChapterChooser
def init
unless(@model.company.invoiceable?)
components.update({
[0,2] => :invoiceability,
[0,3] => :document,
})
css_map.store([0,3], 'list')
colspan_map.store([0,3], 2)
end
super
end
- src/view/chapter.rb
#require 'encoding/character/utf-8'
- install tmail (1.2.7.1)
- src/util/exporter.rb
# encoding: utf-8
- install archive-tarsimple (1.1.1)
- src/view/admin/package.rb
# encoding: utf-8
- src/view/admin/assign_patinfo.rb
# encoding: utf-8
def compose_footer(matrix)
super
btn = HtmlGrid::Button.new(:back, @model, @session, self)
args = {:pointer => @model.sequence.pointer}
- require 'digest/md5'
# encoding: utf-8
- install gruff (0.3.6)
- install rmagick (2.13.1)
- src/util/umlautsort.rb
- src/view/drugs/minifi.rb
- src/state/hospitals/hospitallist.rb
- src/view/hospitals/hospitallist.rb
- src/view/drugs/csv_result.rb
- src/state/substances/substances.rb
- src/util/iso-latin1.rb
- src/util/notification_logger.rb
# encoding: utf-8
- install paypal (2.0.0)
Fetching: i18n-0.6.0.gem (100%) Fetching: money-3.7.1.gem (100%) Fetching: paypal-2.0.0.gem (100%) WARNING: paypal-2.0.0 has an invalid nil value for @cert_chain Successfully installed i18n-0.6.0 Successfully installed money-3.7.1 Successfully installed paypal-2.0.0 3 gems installed Installing ri documentation for i18n-0.6.0... Installing ri documentation for money-3.7.1... Installing ri documentation for paypal-2.0.0... Installing RDoc documentation for i18n-0.6.0... Installing RDoc documentation for money-3.7.1... Installing RDoc documentation for paypal-2.0.0...
Note
- The other installed libraries
- i18n-0.6.0
- money-3.7.1
- instal activesupport (3.1.0)
masa@masa ~/ywesee/oddb.org $ ruby193 /usr/bin/gem install activesupport Fetching: multi_json-1.0.3.gem (100%) Fetching: activesupport-3.1.0.gem (100%) Successfully installed multi_json-1.0.3 Successfully installed activesupport-3.1.0 2 gems installed Installing ri documentation for multi_json-1.0.3... Installing ri documentation for activesupport-3.1.0... Installing RDoc documentation for multi_json-1.0.3... Installing RDoc documentation for activesupport-3.1.0...
Note
- The other installed libraries
- multi_json-1.0.3
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
...
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/paypal-2.0.0/lib/notification.rb:52:in `<class:Notification>': undefined method `cattr_accessor' for Paypal::Notification:Class (NoMethodError)
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/paypal-2.0.0/lib/notification.rb:40:in `<module:Paypal>'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/paypal-2.0.0/lib/notification.rb:3:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/paypal-2.0.0/lib/paypal.rb:30:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:59:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:59:in `rescue in require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:35:in `require'
from /home/masa/ywesee/oddb.org/src/util/oddbapp.rb:27:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from bin/oddbd:9:in `<main>'
- ruby193rc1/lib/ruby/gems/1.9.1/gems/paypal-2.0.0/lib/notification.rb
require 'active_support/core_ext/class/attribute_accessors'
- install facets (1.8.54)
masa@masa ~/ywesee/oddb.org $ ruby193 /usr/bin/gem install facets --version "=1.8.54" Fetching: facets-1.8.54.gem (100%) WARNING: facets-1.8.54 has an invalid nil value for @cert_chain Successfully installed facets-1.8.54 1 gem installed Installing ri documentation for facets-1.8.54... Installing RDoc documentation for facets-1.8.54...
Note
- The latest facets version is 2.9.2
Run
masa@masa ~/ywesee/oddb.org $ ruby193 bin/oddbd
...
/home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': cannot load such file -- oddb/util/m10l_document (LoadError)
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
from /home/masa/ywesee/oddb.org/src/remote/migel/model_super.rb:194:in `<top (required)>'
from /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
...
Note
- oddb library is necessary to run
Run
masa@masa ~/ywesee/oddb.org $ ruby193 -I ../oddb/lib bin/oddbd
...
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/dbd-pg-0.3.9/lib/dbd/pg/statement.rb:62:in `rescue in execute': ERROR: relation "oddb_persistence_pointer" already exists (DBI::ProgrammingError)
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/dbd-pg-0.3.9/lib/dbd/pg/statement.rb:37:in `execute'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/dbi-0.4.5/lib/dbi/base_classes/database.rb:96:in `execute'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/dbi-0.4.5/lib/dbi/base_classes/database.rb:114:in `do'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/dbi-0.4.5/lib/dbi/handles/database.rb:106:in `do'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/storage.rb:176:in `create_index'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/index.rb:226:in `initialize'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:148:in `new'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:148:in `block in create_index'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/storage.rb:558:in `call'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/storage.rb:558:in `block in transaction'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/dbi-0.4.5/lib/dbi/handles/database.rb:209:in `transaction'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/connection_pool.rb:36:in `block in method_missing'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/connection_pool.rb:26:in `next_connection'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/connection_pool.rb:35:in `method_missing'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/storage.rb:554:in `transaction'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:520:in `transaction'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:140:in `create_index'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:131:in `block in create_deferred_indices'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:125:in `each'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:125:in `create_deferred_indices'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:437:in `setup'
from bin/oddbd:30:in `<main>'
Note
- I have debugged this error before.
- ruby193rc1/lib/ruby/gems/1.9.1/gems/dbi-0.4.5/lib/dbi/handles/statement.rb
def fetch_all
sanity_check({:fetchable => true, :prepared => true, :executed => true})
cols = column_names
fetched_rows = []
begin
while row = fetch do
#fetched_rows.push(row)
fetched_rows.push(row.to_a)
end
rescue Exception
end
@handle.cancel
@fetchable = false
return fetched_rows
end
Run
masa@masa ~/ywesee/oddb.org $ ruby193 -I ../oddb/lib bin/oddbd
...
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/18_19_loading_compatibility.rb:41:in `_load': undefined method `new!' for Date:Class (NoMethodError)
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/marshal.rb:15:in `load'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/marshal.rb:15:in `load'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:588:in `restore'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:313:in `block in fetch_or_restore'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:308:in `call'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:308:in `fetch_or_do'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:312:in `fetch_or_restore'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:299:in `block in fetch_named'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:308:in `call'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:308:in `fetch_or_do'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:291:in `fetch_named'
from /home/masa/ywesee/oddb.org/src/util/oddbapp.rb:1337:in `initialize'
from bin/oddbd:33:in `new'
from bin/oddbd:33:in `<main>'
Comment out 'new!' suspend
- ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/18_19_loading_compatibility.rb
#new!(ajd, of, sg)
new
Run
masa@masa ~/ywesee/oddb.org $ ruby193 -I ../oddb/lib bin/oddbd
...
init system
/home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/marshal.rb:15:in `load': undefined class/module CSV::Cell (ArgumentError)
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/marshal.rb:15:in `load'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:234:in `block in fetch_collection'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:233:in `each'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:233:in `fetch_collection'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:592:in `restore'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:313:in `block in fetch_or_restore'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:308:in `call'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:308:in `fetch_or_do'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:312:in `fetch_or_restore'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:600:in `restore_object'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:565:in `load_object'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:221:in `block in fetch'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:308:in `call'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:308:in `fetch_or_do'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/cache.rb:220:in `fetch'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/stub.rb:49:in `odba_receiver'
from /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/odba-1.0.0/lib/odba/stub.rb:112:in `method_missing'
from /home/masa/ywesee/oddb.org/src/util/oddbapp.rb:750:in `rebuild_atc_chooser'
from /home/masa/ywesee/oddb.org/src/util/oddbapp.rb:96:in `init'
from /home/masa/ywesee/oddb.org/src/util/oddbapp.rb:1341:in `initialize'
from bin/oddbd:33:in `new'
from bin/oddbd:33:in `<main>'
Note
CSV::Cell class is removed in Ruby 1.9!!- add the Cell old definition in ruby193rc1/lib/ruby/1.9.1/csv.rb
class CSV
# The version of the installed library.
VERSION = "2.4.8".freeze
# deprecated
class Cell < String
def initialize(data = "", is_null = false)
super(is_null ? "" : data)
end
def data
to_s
end
end
Run
masa@masa ~/ywesee/oddb.org $ ruby193 -I ../oddb/lib bin/oddbd .... init system ODBA::Stub was unable to replace Hash#27397182 from OddbPrevalence:#2 ODBA::Stub was unable to replace Hash#27397181 from OddbPrevalence:#2 init system: 6.85526914 setup drb-delegation reset reset: 6.855549749 system initialized initialized: 6.855669364
Note
- It looks running but the top page is not shown (Error message does not come)
Experiment
masa@masa ~/ywesee/oddb.org $ bin/admin
ch.oddb> registrations.length
-> 10468
ch.oddb> ODDB::Package.find_by_pharmacode('223332')
-> #<ODDB::Package:0x0000000cd767f0>
ch.oddb> ODDB::Package.find_by_pharmacode('223332').name
-> Inderal 10 mg, Tabletten
ch.oddb> search_migel_items_by_migel_code('153050001')[0].name.de
-> CONTAM Vaginaltampon 26mm regular
Note
- bin/admin works
- It maybe a problem of view
Experiment
- src/state/drug/init.rb
class Init < State::Drugs::Global
VIEW = View::Drugs::Search
DIRECT_EVENT = :home_drugs
def init
p "1"
super
p "2"
@model = OpenStruct.new
p "3"
fachinfos = @session.app.sorted_fachinfos
p "4"
if newest = fachinfos.first
p "41"
revision = newest.revision
p "42"
date = Time.local(revision.year, revision.month, revision.day)
p "43"
day = 24 * 3600
p "44"
range = (date-day)...(date+day)
p "45"
@model.fachinfo_news = fachinfos.select { |fi|
range.include? fi.revision
}
p "46"
end
p "5"
@model.feedbacks = @session.app.sorted_feedbacks[0,5]
end
Run
- bin/currencyd
- (bin/yusd)
- ruby193 -I ../oddb/lib bin/oddbd
Access
Log
"1" "2" "3" "4" "41" "42" "43" "44" "45"
Note
- Something happens at range.include? fi.revision
Comment out the range.include? fi.revision
- src/state/drug/init.rb
def init
super
@model = OpenStruct.new
fachinfos = @session.app.sorted_fachinfos
if newest = fachinfos.first
revision = newest.revision
date = Time.local(revision.year, revision.month, revision.day)
day = 24 * 3600
range = (date-day)...(date+day)
@model.fachinfo_news = fachinfos.select { |fi|
#range.include? fi.revision
true
}
end
@model.feedbacks = @session.app.sorted_feedbacks[0,5]
end
suspend
Access
Result
- Failed
Encoding::CompatibilityError incompatible character encodings: ASCII-8BIT and UTF-8
Log
error in SBSM::Session#process: / NoMethodError undefined method `[]' for #<DRb::DRbUnknown:0x0000000751f9f8> /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/sbsm-1.0.0/lib/sbsm/session.rb:204:in `import_cookies' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/sbsm-1.0.0/lib/sbsm/session.rb:355:in `process' /home/masa/ywesee/oddb.org/src/util/session.rb:113:in `process' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/sbsm-1.0.0/lib/sbsm/session.rb:168:in `block in drb_process' <internal:prelude>:10:in `synchronize' error in SBSM::Session#to_html: / Encoding::CompatibilityError incompatible character encodings: ASCII-8BIT and UTF-8 /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:146:in `block in field_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:144:in `each' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:144:in `field_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:135:in `block in to_html' (eval):1256:in `tr' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:134:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:274:in `block (2 levels) in to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:274:in `collect' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:274:in `block in to_html' (eval):769:in `table' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:273:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/composite.rb:263:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:93:in `block in component_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:91:in `each' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:91:in `component_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:110:in `block in to_html' (eval):1290:in `td' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:109:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:146:in `block in field_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:144:in `each' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:144:in `field_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:135:in `block in to_html' (eval):1256:in `tr' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:134:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:274:in `block (2 levels) in to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:274:in `collect' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:274:in `block in to_html' (eval):769:in `table' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb:273:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/composite.rb:263:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/template.rb:123:in `block in to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/template.rb:116:in `call' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/template.rb:116:in `template_tags' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/template.rb:111:in `block (2 levels) in template_html' (eval):1086:in `body' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/template.rb:110:in `block in template_html' /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/cgi/html.rb:432:in `block in html' (eval):1069:in `html' /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/cgi/html.rb:432:in `html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/template.rb:109:in `template_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/template.rb:122:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/sbsm-1.0.0/lib/sbsm/state.rb:179:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/sbsm-1.0.0/lib/sbsm/session.rb:442:in `to_html' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/sbsm-1.0.0/lib/sbsm/session.rb:169:in `block in drb_process' <internal:prelude>:10:in `synchronize' /home/masa/bin/ruby193rc1/lib/ruby/gems/1.9.1/gems/sbsm-1.0.0/lib/sbsm/session.rb:167:in `drb_process' /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/drb/drb.rb:1548:in `perform_without_block' /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/drb/drb.rb:1508:in `perform' /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/drb/drb.rb:1586:in `block (2 levels) in main_loop' /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/drb/drb.rb:1582:in `loop' /home/masa/bin/ruby193rc1/lib/ruby/1.9.1/drb/drb.rb:1582:in `block in main_loop'
Comment out
- ruby193rc1/lib/ruby/gems/1.9.1/gems/sbsm-1.0.0/lib/sbsm/session.rb
def import_cookies(request)
reset_cookie()
=begin
if(cuki = request.cookies[self::class::PERSISTENT_COOKIE_NAME])
cuki.each { |cuki_str|
CGI.parse(CGI.unescape(cuki_str)).each { |key, val|
key = key.intern
valid = @validator.validate(key, val.compact.last)
@cookie_input.store(key, valid)
}
}
end
=end
end
Note
- Maybe two enconding characters are mixed together in the generated html code
Experiment
- ruby193rc1/lib/ruby/gems/1.9.1/gems/htmlgrid-1.0.0/lib/htmlgrid/grid.rb
def field_html(cgi)
...
#html << field.to_html(cgi)
html << field.to_html(cgi).force_encoding('utf-8')
...
Access
Result