< Niklaus.20131217-fix-sequences-00 | 2013 | Niklaus.20131211-integrate-epha-interaction-5 >>
20131216-fix-oddb2-csv-error
Summary
- Fix error in oddb2.csv
Commits
- https://github.com/ngiger/vagrant-oddb_org/commit/a0022173e983db482739a1953eee1c173548d256 Added git pull to make puppet apply pass when Gemfiles have changed
- https://github.com/ngiger/oddb.org/commit/fdc04865eab201334f3b52c2e684783e1eb2de0a Remove binding.pry
- https://github.com/ngiger/oddb.org/commit/876ad848bf48af54c62269df836e53ffb4333aba Added epha-interaction
Index
---
integrate a simple interface to display the interaction from EPHA
Continue work. Example is still interaction is between Marcoumar and Aspirin. Open problems are:
- interaction_chooser should work items having more than one ATC-code
- import of epha_interactions should collect references, too.
- should allow direct access to results via URL
- unit-test
- Ratings (german only) fix coded in src/view/interactions/interaction_chooser.rb.
- Same for html color codes
- Text is still "Medikamente wählen und dann die Interaktion in 3D anzeigen"
Example at matrix.epha.org is:
- Losartan Mepha
- Metoprolol-Teva Reta
- Nolvadex
- Paroxetin-Mepha
Commit a fix Added git pull to make puppet apply pass when Gemfiles have changed because a puppet apply did not work on my vagrant machine as yus and currency did not yet have a Gemfile.
Running jobs/import_daily on oddb-ci2 failed. Fixed with commit Remove binding.pry
Creating the watir test-case to fasten up tests. It took some time to add a test that waits long enough and works also when oddbd was just started. See Attach:interactions_spec.rb. Takes about 90 seconds when oddbd must start.
Now we have all the needed info. As seen in the 
Tried several times updating the css stylesheets till I understood, that I have to run bin/update_css to install the changed *.css file. Now the styles are applied (colors are awful, but at least I am sure that I can identify the different style. Don't know why for nolvadex the width is different. Updated the screenshot.
Added different background colours for different severties. Several small fixe. Now I am quite satisfied with the result. See 
.
Pushed changes via commit Added epha-interaction
Fix error in oddb2.csv
We got yesterday the following error while running import_daily:
Plugin: ODDB::CsvExportPlugin Error: NoMethodError Message: undefined method `multi' for :@odba_id:Symbol Backtrace: /var/www/oddb.org/src/view/drugs/csv_result.rb:321:in `block in size' /var/www/oddb.org/src/view/drugs/csv_result.rb:319:in `collect' /var/www/oddb.org/src/view/drugs/csv_result.rb:319:in `size' /var/www/oddb.org/src/view/drugs/csv_result.rb:450:in `block (3 levels) in to_csv' /var/www/oddb.org/src/view/drugs/csv_result.rb:448:in `collect' /var/www/oddb.org/src/view/drugs/csv_result.rb:448:in `block (2 levels) in to_csv' /var/www/oddb.org/src/view/drugs/csv_result.rb:433:in `each' /var/www/oddb.org/src/view/drugs/csv_result.rb:433:in `block in to_csv' /var/www/oddb.org/src/view/drugs/csv_result.rb:426:in `each' /var/www/oddb.org/src/view/drugs/csv_result.rb:426:in `to_csv' /var/www/oddb.org/src/view/drugs/csv_result.rb:470:in `block in to_csv_file' /var/www/oddb.org/src/view/drugs/csv_result.rb:469:in `open' /var/www/oddb.org/src/view/drugs/csv_result.rb:469:in `to_csv_file' /var/www/oddb.org/src/plugin/csv_export.rb:63:in `_export_drugs' /var/www/oddb.org/src/plugin/csv_export.rb:42:in `export_drugs_extended' /var/www/oddb.org/src/util/updater.rb:101:in `block in export_oddb2_csv' /var/www/oddb.org/src/util/updater.rb:495:in `call' /var/www/oddb.org/src/util/updater.rb:495:in `wrap_update' /var/www/oddb.org/src/util/updater.rb:99:in `export_oddb2_csv' /var/www/oddb.org/src/util/updater.rb:265:in `update_bsv_followers' /var/www/oddb.org/src/util/updater.rb:203:in `run' /var/www/oddb.org/jobs/import_daily:13:in `block in <module:Util>' /var/www/oddb.org/src/util/job.rb:40:in `call' /var/www/oddb.org/src/util/job.rb:40:in `run' /var/www/oddb.org/jobs/import_daily:12:in `<module:Util>' /var/www/oddb.org/jobs/import_daily:11:in `<module:ODDB>' /var/www/oddb.org/jobs/import_daily:10:in `<main>'
est/test_plugin/csv_export.rb has 4 skips but no failures. Adding debug output to catch the error. But on my oddb-ci2 the import passes without any problem. Getting the db_dump from thinpower. Did not help. Cannot reproduce it here.