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20160203-fix-bsv-followers

Summary

  • Adapt FI-parser to use refdata names for packages
  • Fix bsv_followers

Commits

Index

Keep in Mind for work to do
  • Fix dojo error http://www.sitepen.com/blog/2012/10/31/debugging-dojo-common-error-messages/#forgot-dom-ready
  • I removed on May-27 tests for ix_registrationss, fix_sequences, fix_compositions, fix_packages from test/test_plugin/swissmedic.rb,as he could not find any references for them in the src code. Did I erroneously remove stuff when cleaning up the swissmedic import earlier?
  • The whole test for older/newer Packages must be adapted to xlsx. One must compare the rows (e.g. by creating csv files) and do the same stuff in xlsx!
  • creat gem: task: input=file with ean-codes, standard output show ean-codes + atc-code. Source is Swissmedic Packungen.xlsx or XML.
  • Import via data/medreg_companies.yaml
  • Fix problem with radioactivatum 99m-technetio when parsing Wirkstoffe
  • Fix galenic_forms when parsing swissmedic.xlsx
  • Cleanup generic_type. Replace it everywhere by sl_generic_type and adapt code accordingly.
  • Get updated ATC-codes from EPha for oddb.org, too.
  • Use refdatabase for oddb.org, too.
  • Check whether we should revert the part which touche src/plugin/text_info.rb of commit 17af82ba4d76a5838683411b260de265531f9e74. We should improve test/stub/oddbapp.rb to work similar for update/pointer as the real oddbapp. In this case we would have a good Stub for plugins. May we need a different stub when working with plugins (which create/modify/destroy ODDB-Objects), when in most other cases a very simple stub is sufficient.
  • When a logged in admin user changes an atc_code of a product, the corresponding atc_class must update its sequences, too.
  • Order of entering search type and value should not matter. Both should show long URL with search
  • Remove parser for minifi (but keep the minifi)

Adapt FI-parser to use refdata names for packages

Adding a test case with all FI/PI for Tramal IKSNR 43788.

But the problem is, that I cannot find an easy way to match GTIN/name from refdata to the. Here is what I have.

  • GTIN and name from refdata 
 refdata.values.first.collect{|x| [ x[:gtin], x[:name_fr]] }
 [["7680437880197", "TRAMAL gouttes 100 mg/ml 10 ml"],
 ["7680437880272", "TRAMAL gouttes 100 mg/ml 10 x 10 ml"],
 ["7680437880357", "TRAMAL gouttes 100 mg/ml 3 x 10 ml"],
 ["7680437880517", "TRAMAL gouttes 100 mg/ml av pompe dosage 96 ml"],
 ["7680437880784", "TRAMAL gouttes 100 mg/ml av pompe dosage 50 ml"],
 ["7680437880869", "TRAMAL gouttes 100 mg/ml av pompe dosage 30 ml"]]
  • current values for name, etc in database 
pry(#<ODDB::TextInfoPlugin>)> reg.packages.collect{|x| x.name}
=> ["Tramal, Tropfen", "Tramal, Tropfen", "Tramal, Tropfen", "Tramal, Tropfen", "Tramal, Tropfen", "Tramal, Tropfen"]
pry(#<ODDB::TextInfoPlugin>)>                 reg.packages.collect{|x| x.name_base}
=> ["Tramal", "Tramal", "Tramal", "Tramal", "Tramal", "Tramal"]
pry(#<ODDB::TextInfoPlugin>)>                 reg.packages.collect{|x| x.basename}
=> ["Tramal", "Tramal", "Tramal", "Tramal", "Tramal", "Tramal"]
  • Value of chapter name in patinfo 
pry(#<ODDB::TextInfoPlugin>)> pis.values.first.name
=> Tramal® Gouttes avec pompe de dosage
  • No way to find TRAMAL gouttes 100 mg/ml av pompe dosage 30 ml in the text of the patinfo

Improving my split_aips.rb script to add also the info from refdata. Thinking on how to add its output each time I run import_textinfo.

I must rework plugin/textinfo.rb to be able to use my split algorithm. Also should we not also provide the italian version of the Patinfo it is present?

Improving the unit tests go check the reports and filtering via options.

Using xmllint to pretty format the generated xml and html files.

Saving the intermediat patch in Attach:rework_textinfo.txt

Fix bsv_followers

Looking at the following error 

Plugin: ODDB::RefdataPlugin
Error: DRb::DRbConnError
Message: too large packet 54337903
Backtrace:
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:573:in `load'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:633:in `recv_reply'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:918:in `recv_reply'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1197:in `send_message'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1088:in `block (2 levels) in method_missing'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1172:in `open'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1087:in `block in method_missing'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1105:in `with_friend'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1086:in `method_missing'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/invokemethod.rb:10:in `block_yield'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/invokemethod.rb:17:in `block in perform_with_block'
(druby://localhost:50001) /var/www/oddb.org/ext/refdata/src/refdata.rb:23:in `session'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/invokemethod.rb:14:in `perform_with_block'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1506:in `perform'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1586:in `block (2 levels) in main_loop'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1582:in `loop'
(druby://localhost:50001) /usr/lib64/ruby/1.9.1/drb/drb.rb:1582:in `block in main_loop'
/var/www/oddb.org/src/plugin/refdata.rb:85:in `update_package_trade_status'
/var/www/oddb.org/src/util/updater.rb:573:in `block in update_notify_simple'
/var/www/oddb.org/src/util/updater.rb:549:in `call'
/var/www/oddb.org/src/util/updater.rb:549:in `wrap_update'
/var/www/oddb.org/src/util/updater.rb:567:in `update_notify_simple'
/var/www/oddb.org/src/util/updater.rb:484:in `update_package_trade_status_by_refdata'
/var/www/oddb.org/src/util/updater.rb:298:in `update_bsv_followers'
jobs/import_bsv_followers:14:in `block in <module:Util>'
/var/www/oddb.org/src/util/job.rb:40:in `call'
/var/www/oddb.org/src/util/job.rb:40:in `run'
jobs/import_bsv_followers:12:in `<module:Util>'
jobs/import_bsv_followers:11:in `<module:ODDB>'
jobs/import_bsv_followers:10:in `<main>'

Okay. Moved the global loop outside calling refdata get_refdata_info. Looks that is works now. Cleaning up some debug output.

Fixed another problem that the stored pharmacode often gets needlessly updated from e.g Updating 98631 -> 0098631.

Pushed commit Finish renaming check_item -> get_refdata_info

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Page last modified on February 03, 2016, at 05:46 PM